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CellSTAR: Full Data Download

Download the Annotated Reference Data across Diverse Species
Species Species ID Download
Ambystoma mexicanum NCBl:txid8296  Click to Save
Anopheles gambiae NCBI:txid7165  Click to Save
Caenorhabditis elegans NCBl:txid6239  Click to Save
Callithrix jacchus NCBI:txid9483  Click to Save
Ciona intestinalis NCBl:txid7719  Click to Save
Danio rerio NCBl:txid7955  Click to Save
Drosophila melanogaster NCBl:txid7227  Click to Save
Gallus gallus NCBI:txid9031  Click to Save
Homo sapiens NCBl:txid9606  Click to Save
Hydra NCBl:txid6083  Click to Save
Macaca fascicularis NCBl:txid9541  Click to Save
Mus musculus NCBl:txid10090  Click to Save
Nematostella vectensis NCBl:txid45351  Click to Save
Oryctolagus cuniculus NCBI:txid9986  Click to Save
Schistosoma mansoni NCBI:txid6183  Click to Save
Spongilla lacustris NCBI:txid6055  Click to Save
Xenopus laevis NCBl:txid8355  Click to Save
Xenopus tropicalis NCBI:txid8364  Click to Save

Download the Canonical Marker Data of Specific Cell Type
File Name Description Download
Canonical_Marker.csv All canonical cell gene markers associated with cell populations of reference data  Click to Save

Download the Annotation-related Experimental Metadata
File Name Description Download
Metadata.csv A collection of relevant metadata about the scRNA-seq experiment associated with reference data  Click to Save

Download the Analysis Result of Annotated Reference Data
File Name Description Download
Top_genes.zip Results of detected top three DGEs of each cell type, as calculated by Seurat using the Wilcoxon Rank Sum test.  Click to Save

Cite CellSTAR

Y. Zhang, H. C. Sun, W. Zhang, T. T. Fu, S. J. Huang, M. J. Mou, J. S. Zhang, J. Q. Gao, Y. C. Ge, Q. X. Yang, F. Zhu. CellSTAR: a comprehensive resource for single-cell transcriptomic annotation. Nucleic Acids Research. 2023 Oct 19: gkad874. PMID: 37855686

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Correspondence

Prof. Qingxia Yang
Department of Bioinformatics, Nanjing University of Posts and Telecommunications, China

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